simphony simulates large-scale, rhythmic data, including transcriptome data and behavioral activity data. For technical details on how we designed and validated simphony, check out the paper and the accompanying results.
Installation
If you use RStudio, go to Tools -> Global Options… -> Packages -> Add… (under Secondary repositories), then enter:
- Name: hugheylab
- Url: https://hugheylab.github.io/drat/
You only have to do this once. Then you can install or update the package by entering:
if (!requireNamespace('BiocManager', quietly = TRUE))
install.packages('BiocManager')
BiocManager::install('simphony')Alternatively, you can install or update the package by entering:
if (!requireNamespace('BiocManager', quietly = TRUE))
install.packages('BiocManager')
BiocManager::install('simphony', site_repository = 'https://hugheylab.github.io/drat/')Usage
For an introduction to the package, read the introductory vignette. To explore more of simphony’s capabilities, check out the example vignette. For more details, check out the reference documentation.
